Ressources génomiques mises à disposition par des membres du CATI BARIC :
Portails génomiques
| Genomes | Ressource | Research unit |
| Plants & pests | LIPME Bioinfo Genomics | UMR 441 LIPME |
| Brassicaceae plants | BBIP | UMR 1349 IGEPP |
| Arthropods | BIPAA | UMR 1349 IGEPP |
| Nematods | Meloidogyne | UMR 1355 ISA |
| Phytopathogenic fungi | Bioinfobioger | UR 1290 BIOGER |
Portails transcriptomiques
| Genomes | Ressource | Research unit |
| Plants & pests | Expression Atlas | UMR 441 LIPME |
| Vitis vinifera | GREAT | UMR 1131 SVQV |
Outils développés par des membres du CATI BARIC :
Séquence / assemblage de génome
| Tool | Description | Publication | Research unit |
| NanoBAC | Assembly of ONT reads obtained from the sequencing of BACs containing repetitive regions (such as ribosomal DNA) | UMR 1332 BFP |
Annotation & réseaux métaboliques
| Tool | Description | Publication | Research unit |
| EuGene | Annotation pipeline | DOI | UMR 0441 LIPME |
| MetExplore | Metabolic network curation, network exploration and omics data analysis | DOI | UMR 0441 LIPME |
| TEGRiP | Transposable Elements Genes RelationshIps Pipeline | DOI | UMR 1332 BFP |
| IngenAnnot | Inspection of Gene Annotation | DOI | UR 1290 BIOGER |
| GeneNeighborhood | Analyze the orientation and distances of neighboring genes for your favorite gene set | UMR 1332 BFP |
Intégration de données & Visualisation
| Tool | Description | Publication | Research unit |
| myGenomeBrowser | Build and share your own genome browsers | DOI | UMR 0441 LIPME |
| AskOmics | Data integration and visual query interface | UMR 1349 IGEPP |
Transcriptomique
| Tool | Description | Publication | Research unit |
| MtExpress | Analysis and visualisation of expression data | DOI | UMR 0441 LIPME |
| GREAT | GRape Expression Atlas | | UMR 1131 SVQV |
| AskoR | RNAseq data analysis tool | | UMR 1349 IGEPP |
| SATQPCR | Statistical Analysis Tool for Quantitative Real-time PCR Data | DOI | UMR 1355 ISA |
Génomique comparative & métagénomique
| Tool | Description | Publication | Research unit |
| Family Companion | Compare proteomes | DOI | UMR 0441 LIPME, UMR1345 IRHS, UMR 1355 ISA |
| Alienness | Rapid detection of candidate horizontal gene transfers across the tree of life | DOI | UMR 1355 ISA / UMR 0441 LIPME |
| KI-S | A rapid and simple method for assessing and representing genome sequence relatedness | DOI | UMR1345 IRHS |
| SkIf | Specific k-mers Identification | DOI | UMR1345 IRHS |
| CIRM-CFBP Galaxy instance | Bacteria, comparative genomics | | UMR1345 IRHS |
| vitiVir | Identification and discovery of grapevine associated phytoviruses and mycoviruses | UMR 1332 BFP | |
| virAnnot | Viral Diversity Estimation and OTU Assignation for Virome Sequencing Data | DOI | UMR 1332 BFP |