Ressources et outils

Ressources génomiques mises à disposition par des membres du CATI BARIC :

Portails génomiques
GenomesRessourceResearch unit
Plants & pestsLIPME Bioinfo GenomicsUMR 441 LIPME
Brassicaceae plantsBBIPUMR 1349 IGEPP
ArthropodsBIPAAUMR 1349 IGEPP
NematodsMeloidogyneUMR 1355 ISA
Phytopathogenic fungiBioinfobiogerUR 1290 BIOGER
Portails transcriptomiques
GenomesRessourceResearch unit
Plants & pestsExpression AtlasUMR 441 LIPME
Vitis viniferaGREATUMR 1131 SVQV

Outils développés par des membres du CATI BARIC :

Annotation & réseaux métaboliques
ToolDescriptionPublicationResearch unit
EuGeneAnnotation pipelineDOIUMR 0441 LIPME
MetExploreMetabolic network curation, network exploration and omics data analysisDOIUMR 0441 LIPME
TEGRiPTransposable Elements Genes RelationshIps PipelineDOIUMR 1332 BFP
Intégration de données & Visualisation
ToolDescriptionPublicationResearch unit
myGenomeBrowserBuild and share your own genome browsersDOIUMR 0441 LIPME
AskOmicsData integration and visual query interfaceUMR 1349 IGEPP
Transcriptomique
ToolDescriptionPublicationResearch unit
MtExpressAnalysis and visualisation of expression dataDOIUMR 0441 LIPME
GREATGRape Expression AtlasUMR 1131 SVQV
AskoRRNAseq data analysis toolUMR 1349 IGEPP
SATQPCRStatistical Analysis Tool for Quantitative Real-time PCR DataDOIUMR 1355 ISA
Génomique comparative & métagénomique
ToolDescriptionPublicationResearch unit
Family CompanionCompare proteomesDOIUMR 0441 LIPME, UMR1345 IRHS, UMR 1355 ISA
AliennessRapid detection of candidate horizontal gene transfers across the tree of lifeDOIUMR 1355 ISA / UMR 0441 LIPME
KI-SA rapid and simple method for assessing and representing genome sequence relatednessDOIUMR1345 IRHS
SkIfSpecific k-mers IdentificationDOIUMR1345 IRHS
CIRM-CFBP Galaxy instanceBacteria, comparative genomicsUMR1345 IRHS
vitiVirIdentification and discovery of grapevine associated phytoviruses and mycovirusesUMR 1332 BFP
virAnnotViral Diversity Estimation and OTU Assignation for Virome Sequencing DataDOIUMR 1332 BFP