Discussion autour des formats de fichiers.
Les standards à utiliser, les bibliothèques, les bonnes pratiques.
Bed file
You are currently viewing a revision titled "Bed file", saved on 12 May 2017 at 13 h 44 min by Sébastien Letort | |
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Title | Bed file |
Content | Bed : Browser Extensible DataSpecificationsOfficially none, but UCSC browser propose one that can be used : http://www.genome.ucsc.edu/FAQ/FAQformat.html#format1 Most prog (I've used) consider only the 3 first column (seq_id, start, end).Warning :UCSC spec. use 0-based coordinates, half-open region, not all prog consider this.SamplesS1chr7 127471196 127472363 chr7 127472363 127473530 chr7 127473530 127474697 S2chr7 0 1 base_une Recommended library?Recommended toolsbedops : https://bedops.readthedocs.io bedtools : bedtools.readthedocs.ioComments
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