- Lemane, T., Lezzoche, N., Lecubin, J., Pelletier, E., Lescot, M., Chikhi, R., & Peterlongo, P. (2023). kmindex and ORA: indexing and real-time user-friendly queries in terabytes-sized complex genomic datasets. bioRxiv, 2023-05
- Robidou, L., & Peterlongo, P. (2023). fimpera: drastic improvement of Approximate Membership Query data-structures with counts. Bioinformatics, 39(5), btad305.
- Lemane, Téo, Paul Medvedev, Rayan Chikhi, and Pierre Peterlongo. “kmtricks: Efficient construction of Bloom filters for large sequencing data collections.” bioinformatics advance (2022).
- Robidou, Lucas, and Pierre Peterlongo. “findere: fast and precise approximate membership query.” SPIRE (2021).
- Vicedomini, Riccardo, Christopher Quince, Aaron E. Darling, and Rayan Chikhi. “Strainberry: automated strain separation in low-complexity metagenomes using long reads.” Nature Communications 12, no. 1 (2021): 1-14
- Vernette, Caroline, et al. “The Ocean Gene Atlas v2. 0: online exploration of the biogeography and phylogeny of plankton genes.” Nucleic Acids Research (2022).