Data structures
- findere: Drastic limitation of false positives while indexing k-mers with Bloom Filters
- fimpera: Findere adapted to indexing kmers with their counts.
Search engines
- kmtricks: Efficient construction of Bloom filters for large sequencing data collections
- kmindex: Creation of highly efficient indexes for complex and large genomic data. Used for constructing the ORA server.
de novo differential studies
- kmdiff: large-scale and user-friendly differential k-mer analyses