The scientific data sharing platform

ACCESS

 

Seek presentation

 

Powered by Seek web platform, CeSGO scientific data sharing platform is dedicated to the sharing of heterogeneous scientific research.

 


The content

This web service allows to upload content in relation with the scientific research (e.g. publications, protocoles, projects, institutions, etc.) and to create associations with experimental informations.


FAIR data

FAIR = Findable, Accessible, Interoperable, and Re-usable.

The aim is each data must respect these four terms. This service answers to these questions by attaching data with experimental informations.


ISA : Investigation / Study / Assay

ISA formalism is used to describe biological activities.

Investigation

Project context

e.g. Growth control of the eukaryote cell: a systems biology study in yeast

Study

A unit of research

e.g. Study of the impact of changes in flux on the transcriptome under different nutrient limitations

Assay

Analytical measurement

e.g. Protein expression profiling using mass spectrometry


Data

Data can be imported in the website or can be defined by url; a combinaison with data access platform is possible.


The sharing

Through a full policy manager, scientific research can be share for the community; it’s the open-data.


SEEK assets

Several objects can be push in the SEEK model.

Each content is related to the biological information (ISA).


SEEK Projects

In order to add content in SEEK web interface, you have to join a project.

During the first connection, user can join existing projects or can ask the creation of a new one. Please note that only the SEEK administrator can create a new project.

If you missed that, please send a message to GenOuest support thought Seek feedback feature.


Videos

Part 1: Login and projects

Link: CeSGO scientific data sharing – Login

Online:

 

Part 2: Add user in your project (for admin project)

Link: CeSGO scientific data sharing – Add user in project

Online:

 

Part 3: Create an ISA investigation

Link: CeSGO scientific data sharing – Create an investigation

Online:

 

Part 4: Create an ISA study

Link: CeSGO scientific data sharing – Create a study

Online:

 

Part 5: Create a strain for an organism

Link: CeSGO scientific data sharing – Create a strain

Online:

 

Part 6: Create a sample type

Link: CeSGO scientific data sharing – Create a sample type

Online:

 

Part 7: Create a sample

Link: CeSGO scientific data sharing – Create a sample

Online:

 

Part 8: Create an ISA assay

Link: CeSGO scientific data sharing – Create an assay

Online:

Part 9: Create a publication

Link: CeSGO scientific data sharing – Create a publication

Online:

 

Part 10: Create a data file

Link: CeSGO scientific data sharing – Create a data file

Online:

 

Part 11: Create a protocol (SOP)

Link: CeSGO scientific data sharing – Create a SOP

Online: