This web service allows to upload content in relation with the scientific research (e.g. publications, protocoles, projects, institutions, etc.) and to create associations with experimental informations.
FAIR = Findable, Accessible, Interoperable, and Re-usable.
The aim is each data must respect these four terms. This service answers to these questions by attaching data with experimental informations.
ISA : Investigation / Study / Assay
ISA formalism is used to describe biological activities.
e.g. Growth control of the eukaryote cell: a systems biology study in yeast
A unit of research
e.g. Study of the impact of changes in flux on the transcriptome under different nutrient limitations
e.g. Protein expression profiling using mass spectrometry
Data can be imported in the website or can be defined by url; a combinaison with data access platform is possible.
Through a full policy manager, scientific research can be share for the community; it’s the open-data.
Several objects can be push in the SEEK model.
Each content is related to the biological information (ISA).
In order to add content in SEEK web interface, you have to join a project.
During the first connection, user can join existing projects or can ask the creation of a new one. Please note that only the SEEK administrator can create a new project.
If you missed that, please send a message to GenOuest support thought Seek feedback feature.
Part 1: Login and projects
Part 2: Add user in your project (for admin project)
Part 3: Create an ISA investigation
Part 4: Create an ISA study
Part 5: Create a strain for an organism
Part 6: Create a sample type
Part 7: Create a sample
Part 8: Create an ISA assay
Part 9: Create a publication
Part 10: Create a data file
Part 11: Create a protocol (SOP)