Jun 2025
- SimdSketch: revisiting sketching algorithms
Ragnar Groot Koerkamp (ETH Zürich)
26/06/2025 - 10:30 - 12:00 Aurigny Room, Rennes - Wise Ancestors: Braiding Biotechnology, Indigenous Science, and Traditional Ecological Knowledge for Biodiversity Conservation
Solenne CORREARD
12/06/2025 - 10:30 - 12:00 Aurigny Room, Rennes - Assembly and phasing of long reads using pangenome graph alignment
Francesco Andreace (Institut Pasteur)
05/06/2025 - 10:30 - 12:00 Aurigny Room, Rennes
May 2025
- From genome annotation to the origins of new functions: the case of quinone biosynthetic pathways
Sophie ABBY
21/05/2025 - 10:00 - 11:30 Salle Oléron, Rennes - Fast and Efficient Genome Analysis via New Algorithms and Architectures
Can Firtina (SAFARI Research Group, ETH Zurich)
06/05/2025 - 09:45 - 11:00 Aurigny Room, Rennes
Nov 2024
- Data Leakage in Biomedical Knowledge Graph Link Prediction: A Benchmark Study
Marie-Galadriel Brière (Université Aix-Marseille)
21/11/2024 - 11:00 - 12:30 Aurigny Room, Rennes - Machine and Deep Learning applications for the understanding and fine-tuning of plant interactions with insects
Marc Galland (INRAE)
14/11/2024 - 10:30 - 12:00 Aurigny Room, Rennes - Ten years of rice pangenomics - lessons and expectatives
François Sabot (IRD)
07/11/2024 - 10:30 - 12:00 Aurigny Room, Rennes
Oct 2024
- Vidjil face aux clones mutants : quelles méthodes sans alignement ?
Mikaël Salson (Université de Lille)
24/10/2024 - 10:30 - 12:00 Aurigny Room, Rennes - Unveiling abundance-dependent metabolic phenotypes of microbial communities
Alejandro Maass (University of Chile)
10/10/2024 - 10:30 - 12:00 Aurigny Room, Rennes
Apr 2024
- Algorithms based on k-mers for ancient oral metagenomics: Tools for contamination removal and assessment in palaeometagenomics
Camila Duitama-Gonzalez (Institut Pasteur)
18/04/2024 - 10:30 - 12:00 Aurigny Room, Rennes - Une introduction à la compréhension des impacts environnementaux du numérique
Benjamin Ninassi (Inria)
04/04/2024 - 10:30 - 12:00 Aurigny Room, Rennes
Feb 2024
- Structural variations discovery using sample-specific strings
Luca Denti (Milano-Bicocca University)
15/02/2024 - 10:30 - 12:00 Aurigny Room, Rennes - Modelling cellular perturbations using interpretable deep-learning models
Carl Herrmann (Heidelberg University)
08/02/2024 - 10:30 - 12:00 Aurigny Room, Rennes - Explainable and predictive models for high-throughput screens in cancer research
Gunnar Klau (University Düsseldorf)
06/02/2024 - 14:00 - 15:30 Aurigny Room, Rennes
Jan 2024
- Lossless compression and its applications to large-scale genomic analyses
Diego Diaz (Helsinki University)
11/01/2024 - 10:30 - 12:00 Aurigny Room, Rennes
Nov 2023
- Efficient enumeration of fixed points in complex Boolean networks using answer set programming
Van-Giang Trinh (Laboratoire d'Informatique et Systèmes)
30/11/2023 - 10:30 - 12:00 Aurigny Room, Rennes - Nanopore long-read sequencing : Application to genome annotation
Thomas Derrien (IGDR)
16/11/2023 - 10:30 - 12:00 Aurigny Room, Rennes
Oct 2023
- Variant calling from sequencing data in the Human Pangenome Reference Consortium
Jean Monlong (INSERM)
12/10/2023 - 10:30 - 12:00 Aurigny Room, Rennes - Reading the « reads », The power of RNAseq at single nucleotide resolution in clinical practice and fundamental research
Stéphane Pyronnet (INSERM)
05/10/2023 - 10:30 - 12:00 Aurigny Room, Rennes
Jul 2023
- Atopic dermatitis-derived Staphylococcus aureus strains: what makes them special in the interplay with the host
Francesca Brunetti (Sapienza University of Rome)
13/07/2023 - 10:30 - 12:00 Aurigny Room, Rennes
Jun 2023
- Résolution de problèmes combinatoires issus de la bio-informatique
Ronan Bocquillon (Université de Tour)
15/06/2023 - 10:30 - 12:00 Aurigny Room, Rennes - Big data in sequence bioinformatics
Rayan Chikhi (Institut Pasteur)
08/06/2023 - 10:30 - 12:00 Aurigny Room, Rennes
Apr 2023
- Stockage numérique : La Révolution de l’ADN
Stéphane Lemaire (CNRS / Biomemory)
20/04/2023 - 10:30 - 12:00 Aurigny Room, Rennes
Mar 2023
- The role of structural genomic variants in evolution: flies, fish, and general framework
Claire Mérot (ECOBIO)
09/03/2023 - 10:30 - 12:00 Aurigny Room, Rennes
Feb 2023
- Index distribué de k-mer permettant leur comptage et leur localisation
Alban Mancheron (Université de Montpellier)
09/02/2023 - 10:30 - 12:00 Aurigny Room, Rennes
Jan 2023
- Hypomethylation of circulating retrotransposons: towards a non-invasive pan-cancer diagnosis
Charlotte Proudhon (INSERM)
12/01/2023 - 10:30 - 12:00 Aurigny Room, Rennes
Dec 2022
- Genomes assembly and phasing: towards a better view of the evolutionary history of yeast
Anne Friedrich (Université de Strasbourg)
15/12/2022 - 10:30 - 12:00 Aurigny Room, Rennes
Oct 2022
- Modular reference indexing with the de Bruijn graphs: overview and challenges
Giulio Pibiri (Università Ca' Foscari Venezia)
20/10/2022 - 10:30 - 12:00 Aurigny Room, Rennes - Population genomics of Ammonium Oxidizing Archaea in abyssal and hadal sediments
Lois Maignien (université de Brest)
13/10/2022 - 10:30 - 12:00 Aurigny Room, Rennes
Sep 2022
- Méta-analyse des neuropathies optiques héréditaires
Marc Ferré (Faculté de médecine d’Angers)
22/09/2022 - 10:30 - 12:00 Aurigny Room, Rennes - Des bases de données orientées graphes à un invariant dans les graphes associés aux protéines
Laurent Vuillon (université Savoie Mont Blanc)
15/09/2022 - 10:30 - 12:00 IRISA / Inria RBA, Rennes
Jun 2022
- The Tree of Life enables efficient and robust compression and search of microbes
Karel Břinda (Inria)
02/06/2022 - 10:30 - 12:00 Aurigny Room, Rennes
Apr 2022
- Towards a better understanding of the molecular and phenotypic evolution of fish gonads
Florent Murat (INRAE)
07/04/2022 - 10:30 - 12:00
Mar 2022
- Des bases de données orientées graphes à un invariant dans les graphes associés aux protéines
Laurent Vuillon (université Savoie Mont Blanc)
31/03/2022 - 10:30 - 12:00
Jan 2022
- Caractérisation de l’exposome chimique pour l’identification de nouveaux facteurs de risques des maladies chroniques
Vincent Bessonneau (EHESP)
27/01/2022 - 10:30 - 12:00
Oct 2021
- Automated strain separation in low-complexity metagenomes using long reads
Riccardo Vicedomini (Institut Pasteur)
28/10/2021 - 10:30 - 12:00 Aurigny Room, Rennes
Jun 2021
- Network science for proteins and molecular dynamics
Laurent Vuillon (University of Savoie Mont Blanc)
17/06/2021 - 10:30 - 12:00 - From "micro"-tests to "macro"-developments with Nanopore on the I2BC sequencing platform
Delphine Naquin (i2bc Saclay)
10/06/2021 - 10:30 - 12:00 - Unraveling tandem repeat variation in personal genomes with long reads
Davide Bolognini (University of Florence, Italy)
03/06/2021 - 10:30 - 12:00
May 2021
- Understanding metabolism : Knowledge networks and assisted reasoning for managing the information overload.
Clément Frainay (INRAE)
27/05/2021 - 10:30 - 12:00
Apr 2021
- Helping systems biology deliver on its promises: Deciphering gene function by using semantic analysis from heterogeneous knowledge resources
Aarón Ayllón Benítez (Umeå University)
01/04/2021 - 10:30 - 12:00
Feb 2021
- A reference-free solution to the viral quasispecies assembly problem
Jasmijn Baaijens (Harvard Medical School)
18/02/2021 - 14:30 - 16:00 - Approche chimio-informatique pour l'étude du métabolome lichénique
Joel Boustie et Damien Olivier (ISCR, Fac Pharmacie Rennes1)
04/02/2021 - 10:30 - 12:00
Jan 2021
- Invasion biologique : effet de la diversité microbienne sur le devenir de Listeria monocytogenes dans les environnements complexes
Pascal Piveteau (INRAE)
28/01/2021 - 10:30 - 12:00
Oct 2020
- Rhea, a FAIR resource of expert curated biochemical reaction data
Anne Morgat (Swiss Prot)
15/10/2020 - 10:30 - 12:00 Aurigny Room, Rennes - MAGs reconstruction problem : a constraint clustering approach
Benjamin Churcheward (université de Nantes)
08/10/2020 - 10:30 - 12:00 Aurigny Room, Rennes
Sep 2020
- Many things you have always wanted to know on Agent-based modeling
Pierrick Tranouez (Université de Rouen)
24/09/2020 - 10:30 - 12:00 Aurigny Room, Rennes
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