Seminars

Oct 2024

• Vidjil face aux clones mutants : quelles méthodes sans alignement ?
  Mikaël Salson (Université de Lille)
  24/10/2024 - 10:30 - 12:00 Aurigny Room, Rennes
• Unveiling abundance-dependent metabolic phenotypes of microbial communities
  Alejandro Maass (University of Chile)
  10/10/2024 - 10:30 - 12:00 Aurigny Room, Rennes

Apr 2024

• Algorithms based on k-mers for ancient oral metagenomics: Tools for contamination removal and assessment in palaeometagenomics
  Camila Duitama-Gonzalez (Institut Pasteur)
  18/04/2024 - 10:30 - 12:00 Aurigny Room, Rennes
• Une introduction à la compréhension des impacts environnementaux du numérique
  Benjamin Ninassi (Inria)
  04/04/2024 - 10:30 - 12:00 Aurigny Room, Rennes

Feb 2024

• Structural variations discovery using sample-specific strings
  Luca Denti (Milano-Bicocca University)
  15/02/2024 - 10:30 - 12:00 Aurigny Room, Rennes
• Modelling cellular perturbations using interpretable deep-learning models
  Carl Herrmann (Heidelberg University)
  08/02/2024 - 10:30 - 12:00 Aurigny Room, Rennes
• Explainable and predictive models for high-throughput screens in cancer research
  Gunnar Klau (University Düsseldorf)
  06/02/2024 - 14:00 - 15:30 Aurigny Room, Rennes

Jan 2024

• Lossless compression and its applications to large-scale genomic analyses
  Diego Diaz (Helsinki University)
  11/01/2024 - 10:30 - 12:00 Aurigny Room, Rennes

Nov 2023

• Efficient enumeration of fixed points in complex Boolean networks using answer set programming
  Van-Giang Trinh (Laboratoire d'Informatique et Systèmes)
  30/11/2023 - 10:30 - 12:00 Aurigny Room, Rennes
• Nanopore long-read sequencing : Application to genome annotation
  Thomas Derrien (IGDR)
  16/11/2023 - 10:30 - 12:00 Aurigny Room, Rennes

Oct 2023

• Variant calling from sequencing data in the Human Pangenome Reference Consortium
  Jean Monlong (INSERM)
  12/10/2023 - 10:30 - 12:00 Aurigny Room, Rennes
• Reading the « reads », The power of RNAseq at single nucleotide resolution in clinical practice and fundamental research
  Stéphane Pyronnet (INSERM)
  05/10/2023 - 10:30 - 12:00 Aurigny Room, Rennes

Jul 2023

• Atopic dermatitis-derived Staphylococcus aureus strains: what makes them special in the interplay with the host
  Francesca Brunetti (Sapienza University of Rome)
  13/07/2023 - 10:30 - 12:00 Aurigny Room, Rennes

Jun 2023

• Résolution de problèmes combinatoires issus de la bio-informatique
  Ronan Bocquillon (Université de Tour)
  15/06/2023 - 10:30 - 12:00 Aurigny Room, Rennes
• Big data in sequence bioinformatics
  Rayan Chikhi (Institut Pasteur)
  08/06/2023 - 10:30 - 12:00 Aurigny Room, Rennes

Apr 2023

• Stockage numérique : La Révolution de l’ADN
  Stéphane Lemaire (CNRS / Biomemory)
  20/04/2023 - 10:30 - 12:00 Aurigny Room, Rennes

Mar 2023

• The role of structural genomic variants in evolution: flies, fish, and general framework
  Claire Mérot (ECOBIO)
  09/03/2023 - 10:30 - 12:00 Aurigny Room, Rennes

Feb 2023

• Index distribué de k-mer permettant leur comptage et leur localisation
  Alban Mancheron (Université de Montpellier)
  09/02/2023 - 10:30 - 12:00 Aurigny Room, Rennes

Jan 2023

• Hypomethylation of circulating retrotransposons: towards a non-invasive pan-cancer diagnosis
  Charlotte Proudhon (INSERM)
  12/01/2023 - 10:30 - 12:00 Aurigny Room, Rennes

Dec 2022

• Genomes assembly and phasing: towards a better view of the evolutionary history of yeast
  Anne Friedrich (Université de Strasbourg)
  15/12/2022 - 10:30 - 12:00 Aurigny Room, Rennes

Oct 2022

• Modular reference indexing with the de Bruijn graphs: overview and challenges
  Giulio Pibiri (Università Ca' Foscari Venezia)
  20/10/2022 - 10:30 - 12:00 Aurigny Room, Rennes
• Population genomics of Ammonium Oxidizing Archaea in abyssal and hadal sediments
  Lois Maignien (université de Brest)
  13/10/2022 - 10:30 - 12:00 Aurigny Room, Rennes

Sep 2022

• Méta-analyse des neuropathies optiques héréditaires
  Marc Ferré (Faculté de médecine d’Angers)
  22/09/2022 - 10:30 - 12:00 Aurigny Room, Rennes
• Des bases de données orientées graphes à un invariant dans les graphes associés aux protéines
  Laurent Vuillon (université Savoie Mont Blanc)
  15/09/2022 - 10:30 - 12:00 IRISA / Inria RBA, Rennes

Jun 2022

• The Tree of Life enables efficient and robust compression and search of microbes
  Karel Břinda (Inria)
  02/06/2022 - 10:30 - 12:00 Aurigny Room, Rennes

Apr 2022

• Towards a better understanding of the molecular and phenotypic evolution of fish gonads
  Florent Murat (INRAE)
  07/04/2022 - 10:30 - 12:00

Mar 2022

• Des bases de données orientées graphes à un invariant dans les graphes associés aux protéines
  Laurent Vuillon (université Savoie Mont Blanc)
  31/03/2022 - 10:30 - 12:00

Jan 2022

• Caractérisation de l’exposome chimique pour l’identification de nouveaux facteurs de risques des maladies chroniques
  Vincent Bessonneau (EHESP)
  27/01/2022 - 10:30 - 12:00

Oct 2021

• Automated strain separation in low-complexity metagenomes using long reads
  Riccardo Vicedomini (Institut Pasteur)
  28/10/2021 - 10:30 - 12:00 Aurigny Room, Rennes

Jun 2021

• Network science for proteins and molecular dynamics
  Laurent Vuillon (University of Savoie Mont Blanc)
  17/06/2021 - 10:30 - 12:00
• From "micro"-tests to "macro"-developments with Nanopore on the I2BC sequencing platform
  Delphine Naquin (i2bc Saclay)
  10/06/2021 - 10:30 - 12:00
• Unraveling tandem repeat variation in personal genomes with long reads
  Davide Bolognini (University of Florence, Italy)
  03/06/2021 - 10:30 - 12:00

May 2021

• Understanding metabolism : Knowledge networks and assisted reasoning for managing the information overload.
  Clément Frainay (INRAE)
  27/05/2021 - 10:30 - 12:00

Apr 2021

• Helping systems biology deliver on its promises: Deciphering gene function by using semantic analysis from heterogeneous knowledge resources
  Aarón Ayllón Benítez (Umeå University)
  01/04/2021 - 10:30 - 12:00

Feb 2021

• A reference-free solution to the viral quasispecies assembly problem
  Jasmijn Baaijens (Harvard Medical School)
  18/02/2021 - 14:30 - 16:00
• Approche chimio-informatique pour l'étude du métabolome lichénique
  Joel Boustie et Damien Olivier (ISCR, Fac Pharmacie Rennes1)
  04/02/2021 - 10:30 - 12:00

Jan 2021

• Invasion biologique : effet de la diversité microbienne sur le devenir de Listeria monocytogenes dans les environnements complexes
  Pascal Piveteau (INRAE)
  28/01/2021 - 10:30 - 12:00

Oct 2020

• Rhea, a FAIR resource of expert curated biochemical reaction data
  Anne Morgat (Swiss Prot)
  15/10/2020 - 10:30 - 12:00 Aurigny Room, Rennes
• MAGs reconstruction problem : a constraint clustering approach
  Benjamin Churcheward (université de Nantes)
  08/10/2020 - 10:30 - 12:00 Aurigny Room, Rennes

Sep 2020

• Many things you have always wanted to know on Agent-based modeling
  Pierrick Tranouez (Université de Rouen)
  24/09/2020 - 10:30 - 12:00 Aurigny Room, Rennes